Mvn clean install dataexport

OsmanR · March 25, 2025, 9:33pm

Hey community, i’ve been trying to set up OpenElis from source code. When attempting to run

mvn clean install -DskipTests

on the dataexport module I get this:

[INFO] Scanning for projects...
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Build Order:
[INFO]
[INFO] Data Export                                                        [pom]
[INFO] Data Export Core                                                   [jar]
[INFO] Data Export API                                                    [jar]
[INFO]
[INFO] ------------------------< org.itech:dataexport >------------------------
[INFO] Building Data Export 0.0.0.9                                       [1/3]
[INFO]   from pom.xml
[INFO] --------------------------------[ pom ]---------------------------------
[INFO] 
[INFO] --- clean:3.2.0:clean (default-clean) @ dataexport ---
[INFO] 
[INFO] --- install:3.1.1:install (default-install) @ dataexport ---
[INFO] Installing C:\Users\osman\OpenELIS-Global-2\dataexport\pom.xml to C:\Users\osman\.m2\repository\org\itech\dataexport\0.0.0.9\dataexport-0.0.0.9.pom
[INFO] 
[INFO] ---------------------< org.itech:dataexport-core >----------------------
[INFO] Building Data Export Core 0.0.0.9                                  [2/3]
[INFO]   from dataexport-core\pom.xml
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- clean:3.2.0:clean (default-clean) @ dataexport-core ---
[INFO] Deleting C:\Users\osman\OpenELIS-Global-2\dataexport\dataexport-core\target
[INFO] 
[INFO] --- resources:3.3.1:resources (default-resources) @ dataexport-core ---
[WARNING] Using platform encoding (UTF-8 actually) to copy filtered resources, i.e. build is platform dependent!
[INFO] skip non existing resourceDirectory C:\Users\osman\OpenELIS-Global-2\dataexport\dataexport-core\src\main\resources
[INFO]
[INFO] --- compiler:3.8.0:compile (default-compile) @ dataexport-core ---
[INFO] Changes detected - recompiling the module!
[WARNING] File encoding has not been set, using platform encoding UTF-8, i.e. build is platform dependent!
[INFO] Compiling 12 source files to C:\Users\osman\OpenELIS-Global-2\dataexport\dataexport-core\target\classes
[INFO] -------------------------------------------------------------
[ERROR] COMPILATION ERROR :
[INFO] -------------------------------------------------------------
[ERROR] /C:/Users/osman/OpenELIS-Global-2/dataexport/dataexport-core/src/main/java/org/itech/fhir/dataexport/core/service/impl/DataExportTaskServiceImpl.java:[42,124] cannot find symbol
  symbol:   method getId()
  location: variable dataExportTask of type org.itech.fhir.dataexport.core.model.DataExportTask
[ERROR] /C:/Users/osman/OpenELIS-Global-2/dataexport/dataexport-core/src/main/java/org/itech/fhir/dataexport/core/service/impl/DataExportTaskServiceImpl.java:[46,52] cannot find symbol
  symbol:   method getStartTime()
  location: variable latestAttempt of type org.itech.fhir.dataexport.core.model.DataExportAttempt
[ERROR] /C:/Users/osman/OpenELIS-Global-2/dataexport/dataexport-core/src/main/java/org/itech/fhir/dataexport/core/service/impl/DataExportTaskServiceImpl.java:[48,17] cannot find symbol
  symbol:   variable log
  location: class org.itech.fhir.dataexport.core.service.impl.DataExportTaskServiceImpl
[ERROR] /C:/Users/osman/OpenELIS-Global-2/dataexport/dataexport-core/src/main/java/org/itech/fhir/dataexport/core/service/impl/DataExportTaskServiceImpl.java:[57,115] cannot find symbol
  symbol:   method getId()
  location: variable dataExportTask of type org.itech.fhir.dataexport.core.model.DataExportTask
[ERROR] /C:/Users/osman/OpenELIS-Global-2/dataexport/dataexport-core/src/main/java/org/itech/fhir/dataexport/core/service/impl/DataExportTaskServiceImpl.java:[60,52] cannot find symbol
  symbol:   method getStartTime()
  location: variable latestAttempt of type org.itech.fhir.dataexport.core.model.DataExportAttempt
[ERROR] /C:/Users/osman/OpenELIS-Global-2/dataexport/dataexport-core/src/main/java/org/itech/fhir/dataexport/core/service/impl/DataExportTaskServiceImpl.java:[62,17] cannot find symbol
  symbol:   variable log
  location: class org.itech.fhir.dataexport.core.service.impl.DataExportTaskServiceImpl
[INFO] 6 errors
[INFO] -------------------------------------------------------------
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary for Data Export 0.0.0.9:
[INFO]
[INFO] Data Export ........................................ SUCCESS [  0.246 s]
[INFO] Data Export Core ................................... FAILURE [  1.844 s]
[INFO] Data Export API .................................... SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time:  2.185 s
[INFO] Finished at: 2025-03-25T16:15:08-05:00
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:3.8.0:compile (default-compile) on project dataexport-core: Compilation failure: Compilation failure:
[ERROR] /C:/Users/osman/OpenELIS-Global-2/dataexport/dataexport-core/src/main/java/org/itech/fhir/dataexport/core/service/impl/DataExportTaskServiceImpl.java:[42,124] cannot find symbol
[ERROR]   symbol:   method getId()
[ERROR]   location: variable dataExportTask of type org.itech.fhir.dataexport.core.model.DataExportTask
[ERROR] /C:/Users/osman/OpenELIS-Global-2/dataexport/dataexport-core/src/main/java/org/itech/fhir/dataexport/core/service/impl/DataExportTaskServiceImpl.java:[46,52] cannot find symbol

it seems like my dataexport module points to the most recent remote repository version:

PS C:\Users\osman\OpenELIS-Global-2\dataexport> git branch -vv
* (HEAD detached at fad9327) fad9327 update spring data

Moses_Mutesasira · March 26, 2025, 9:15am

what java version are you running ??

what does mvn -v return?

OsmanR · March 26, 2025, 5:23pm

PS C:\Users\osman\OpenELIS-Global-2> java -version
java version "23.0.2" 2025-01-21
Java(TM) SE Runtime Environment (build 23.0.2+7-58)                       
Java HotSpot(TM) 64-Bit Server VM (build 23.0.2+7-58, mixed mode, sharing)

PS C:\Users\osman\OpenELIS-Global-2> mvn -v
Apache Maven 3.9.6 (bc0240f3c744dd6b6ec2920b3cd08dcc295161ae)                          
Maven home: C:\Program Files\Apache Software Foundation\apache-maven                   
Java version: 23.0.2, vendor: Oracle Corporation, runtime: C:\Program Files\Java\jdk-23
Default locale: en_US, platform encoding: UTF-8                                        
OS name: "windows 10", version: "10.0", arch: "amd64", family: "windows"               
PS C:\Users\osman\OpenELIS-Global-2>

Moses_Mutesasira · March 26, 2025, 6:00pm

Can you first try installing java 21 and run again ??

mxhdiqaim · March 26, 2025, 11:53pm

I have the same issue. I am also using java version 21

Vishal_Sharma · March 27, 2025, 3:34am

You can try deleting the local cache and building the app again

OsmanR · March 27, 2025, 7:38am

@mxhdiqaim I was able to find a fix

make sure both mvn -v and java -v show the following:

PS C:\Users\osman\OpenELIS-Global-2\dataexport> java -version
java version "21.0.5" 2024-10-15 LTS
Java(TM) SE Runtime Environment (build 21.0.5+9-LTS-239)
Java HotSpot(TM) 64-Bit Server VM (build 21.0.5+9-LTS-239, mixed mode, sharing)
PS C:\Users\osman\OpenELIS-Global-2\dataexport> mvn -version
Apache Maven 3.9.6 (bc0240f3c744dd6b6ec2920b3cd08dcc295161ae)
Maven home: C:\Program Files\Apache Software Foundation\apache-maven
Java version: 21.0.5, vendor: Oracle Corporation, runtime: C:\Program Files\Java\jdk-21
Default locale: en_US, platform encoding: UTF-8
OS name: "windows 10", version: "10.0", arch: "amd64", family: "windows"

in the pom file of the dataexport module, the current pom xml points to a java version of 11 and compiler release of 11, set both to 21 like so:

	<properties>
		<java.version>21</java.version>
		<maven.compiler.release>21</maven.compiler.release>
	</properties>

from here it should be able to compile with no problems

mxhdiqaim · March 27, 2025, 1:20pm

@OsmanR Of course, I followed the steps above and it still wouldn’t compile. see below.

OsmanR · March 29, 2025, 5:34am

@mxhdiqaim from what I see, its showing “release version 11 not supported”, and since your java jdk version is 21, I can think of two more things

Go to File → Project Structure… ensure that both SDK and Language Level point to ver 21, also on modules for both sources and dependencies, ensure that it shows the same, screenshots below:

double check both pom xmls ( pom.xml (openelisglobal) and dataexport\pom.xml) and ensure that both are using java 21 in compilation.

For the main pom xml, ensure you have:

    <properties>
        <maven.java.release>21</maven.java.release>

the dataexport pom xml is like before

	<properties>
		<java.version>21</java.version>
		<maven.compiler.release>21</maven.compiler.release>
	</properties>

segujja_joseph · April 4, 2025, 8:29am

could you just clone the repository again from your fork and again follow the readme document

Dev · April 4, 2025, 11:08am

I faced some setup issues. So, I cloned the repository again and followed the README instructions — everything was up and running in just a few minutes.

segujja_joseph · April 7, 2025, 8:40am

great! happy codding @Dev

MD_Saqlain_Ahmed · May 5, 2025, 12:34pm

Hello everyone, I am struggling of local setup of OpenELIS-2 repository. when I run in dataexport
module

 mvn clean install -DskipTests

I get this error:

WARNING: A restricted method in java.lang.System has been called
WARNING: java.lang.System::load has been called by org.fusesource.jansi.internal.JansiLoader in an unnamed module (file:/C:/Program%20Files/Apache/maven-3.9.9/lib/jansi-2.4.1.jar)
WARNING: Use --enable-native-access=ALL-UNNAMED to avoid a warning for callers in this module
WARNING: Restricted methods will be blocked in a future release unless native access is enabled

WARNING: A terminally deprecated method in sun.misc.Unsafe has been called
WARNING: sun.misc.Unsafe::objectFieldOffset has been called by com.google.common.util.concurrent.AbstractFuture$UnsafeAtomicHelper (file:/C:/Program%20Files/Apache/maven-3.9.9/lib/guava-33.2.1-jre.jar)
WARNING: Please consider reporting this to the maintainers of class com.google.common.util.concurrent.AbstractFuture$UnsafeAtomicHelper
WARNING: sun.misc.Unsafe::objectFieldOffset will be removed in a future release
[INFO] Scanning for projects...
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Build Order:
[INFO]
[INFO] Data Export                                                        [pom]
[INFO] Data Export Core                                                   [jar]
[INFO] Data Export API                                                    [jar]
[INFO]
[INFO] ------------------------< org.itech:dataexport >------------------------
[INFO] Building Data Export 0.0.0.9                                       [1/3]
[INFO]   from pom.xml
[INFO] --------------------------------[ pom ]---------------------------------
[INFO]
[INFO] --- clean:3.2.0:clean (default-clean) @ dataexport ---
[INFO]
[INFO] --- install:3.1.2:install (default-install) @ dataexport ---
[INFO] Installing C:\Users\Riyan\OpenELIS-Global-2\dataexport\pom.xml to C:\Users\Riyan\.m2\repository\org\itech\dataexport\0.0.0.9\dataexport-0.0.0.9.pom
[INFO]
[INFO] ---------------------< org.itech:dataexport-core >----------------------
[INFO] Building Data Export Core 0.0.0.9                                  [2/3]
[INFO]   from dataexport-core\pom.xml
[INFO] --------------------------------[ jar ]---------------------------------
[INFO]
[INFO] --- clean:3.2.0:clean (default-clean) @ dataexport-core ---
[INFO] Deleting C:\Users\Riyan\OpenELIS-Global-2\dataexport\dataexport-core\target
[INFO]
[INFO] --- resources:3.3.1:resources (default-resources) @ dataexport-core ---
[WARNING] Using platform encoding (UTF-8 actually) to copy filtered resources, i.e. build is platform dependent!
[INFO] skip non existing resourceDirectory C:\Users\Riyan\OpenELIS-Global-2\dataexport\dataexport-core\src\main\resources
[INFO]
[INFO] --- compiler:3.8.0:compile (default-compile) @ dataexport-core ---
[INFO] Changes detected - recompiling the module!
[WARNING] File encoding has not been set, using platform encoding UTF-8, i.e. build is platform dependent!
[INFO] Compiling 12 source files to C:\Users\Riyan\OpenELIS-Global-2\dataexport\dataexport-core\target\classes
[INFO] -------------------------------------------------------------
[ERROR] COMPILATION ERROR :
[INFO] -------------------------------------------------------------
[ERROR] /C:/Users/Riyan/OpenELIS-Global-2/dataexport/dataexport-core/src/main/java/org/itech/fhir/dataexport/core/service/impl/DataExportTaskServiceImpl.java:[42,124] cannot find symbol
  symbol:   method getId()
  location: variable dataExportTask of type org.itech.fhir.dataexport.core.model.DataExportTask
[ERROR] /C:/Users/Riyan/OpenELIS-Global-2/dataexport/dataexport-core/src/main/java/org/itech/fhir/dataexport/core/service/impl/DataExportTaskServiceImpl.java:[46,52] cannot find symbol
  symbol:   method getStartTime()
  location: variable latestAttempt of type org.itech.fhir.dataexport.core.model.DataExportAttempt
[ERROR] /C:/Users/Riyan/OpenELIS-Global-2/dataexport/dataexport-core/src/main/java/org/itech/fhir/dataexport/core/service/impl/DataExportTaskServiceImpl.java:[48,17] cannot find symbol
  symbol:   variable log
  location: class org.itech.fhir.dataexport.core.service.impl.DataExportTaskServiceImpl
[ERROR] /C:/Users/Riyan/OpenELIS-Global-2/dataexport/dataexport-core/src/main/java/org/itech/fhir/dataexport/core/service/impl/DataExportTaskServiceImpl.java:[57,115] cannot find symbol
  symbol:   method getId()
  location: variable dataExportTask of type org.itech.fhir.dataexport.core.model.DataExportTask
[ERROR] /C:/Users/Riyan/OpenELIS-Global-2/dataexport/dataexport-core/src/main/java/org/itech/fhir/dataexport/core/service/impl/DataExportTaskServiceImpl.java:[60,52] cannot find symbol
  symbol:   method getStartTime()
  location: variable latestAttempt of type org.itech.fhir.dataexport.core.model.DataExportAttempt
[ERROR] /C:/Users/Riyan/OpenELIS-Global-2/dataexport/dataexport-core/src/main/java/org/itech/fhir/dataexport/core/service/impl/DataExportTaskServiceImpl.java:[62,17] cannot find symbol
  symbol:   variable log
  location: class org.itech.fhir.dataexport.core.service.impl.DataExportTaskServiceImpl
[INFO] 6 errors
[INFO] -------------------------------------------------------------
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary for Data Export 0.0.0.9:
[INFO]
[INFO] Data Export ........................................ SUCCESS [  0.391 s]
[INFO] Data Export Core ................................... FAILURE [  2.701 s]
[INFO] Data Export API .................................... SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time:  3.254 s
[INFO] Finished at: 2025-05-05T17:46:35+05:30
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:3.8.0:compile (default-compile) on project dataexport-core: Compilation failure: Compilation failure:
[ERROR] /C:/Users/Riyan/OpenELIS-Global-2/dataexport/dataexport-core/src/main/java/org/itech/fhir/dataexport/core/service/impl/DataExportTaskServiceImpl.java:[42,124] cannot find symbol
[ERROR]   symbol:   method getId()
[ERROR]   location: variable dataExportTask of type org.itech.fhir.dataexport.core.model.DataExportTask
[ERROR] /C:/Users/Riyan/OpenELIS-Global-2/dataexport/dataexport-core/src/main/java/org/itech/fhir/dataexport/core/service/impl/DataExportTaskServiceImpl.java:[46,52] cannot find symbol
[ERROR]   symbol:   method getStartTime()
[ERROR]   location: variable latestAttempt of type org.itech.fhir.dataexport.core.model.DataExportAttempt
[ERROR] /C:/Users/Riyan/OpenELIS-Global-2/dataexport/dataexport-core/src/main/java/org/itech/fhir/dataexport/core/service/impl/DataExportTaskServiceImpl.java:[48,17] cannot find symbol
[ERROR]   symbol:   variable log
[ERROR]   location: class org.itech.fhir.dataexport.core.service.impl.DataExportTaskServiceImpl
[ERROR] /C:/Users/Riyan/OpenELIS-Global-2/dataexport/dataexport-core/src/main/java/org/itech/fhir/dataexport/core/service/impl/DataExportTaskServiceImpl.java:[57,115] cannot find symbol
[ERROR]   symbol:   method getId()
[ERROR]   location: variable dataExportTask of type org.itech.fhir.dataexport.core.model.DataExportTask
[ERROR] /C:/Users/Riyan/OpenELIS-Global-2/dataexport/dataexport-core/src/main/java/org/itech/fhir/dataexport/core/service/impl/DataExportTaskServiceImpl.java:[60,52] cannot find symbol
[ERROR]   symbol:   method getStartTime()
[ERROR]   location: variable latestAttempt of type org.itech.fhir.dataexport.core.model.DataExportAttempt
[ERROR] /C:/Users/Riyan/OpenELIS-Global-2/dataexport/dataexport-core/src/main/java/org/itech/fhir/dataexport/core/service/impl/DataExportTaskServiceImpl.java:[62,17] cannot find symbol
[ERROR]   symbol:   variable log
[ERROR]   location: class org.itech.fhir.dataexport.core.service.impl.DataExportTaskServiceImpl
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR]   mvn <args> -rf :dataexport-core

Also here are my java and mvn versions

Now, After all this I still face error. I’ve also tried to Re-Fork the repository but did’nt work.
Any guidance would be appreciated.

aditya · May 5, 2025, 3:07pm

@MD_Saqlain_Ahmed use java 21 and maven version looks fine

MD_Saqlain_Ahmed · May 5, 2025, 6:59pm

@aditya Thank you! It worked, Now I am able to login and access the dashboard. But how do I access the homepage of OpenELIS: https://openelis-global.org/ locally?

aditya · May 5, 2025, 7:40pm

read the README.md file in main repo!

MD_Saqlain_Ahmed · May 6, 2025, 7:06am

Yep got it @aditya, Thank you so much for helping me in setting up OpenELIS locally .
Also created My first Issue and and PR. I have followed all the steps to create one from PULL_REQUEST_TIPS.md. looking for it to review.

Issue: Invalid Characters in Numeric Input Feild · Issue #1981 · DIGI-UW/OpenELIS-Global-2 · GitHub
PR: Issue-1981: Made only Numeric Values in the Input Field by mdsaqlainahmed786 · Pull Request #1982 · DIGI-UW/OpenELIS-Global-2 · GitHub

aditya · May 6, 2025, 7:25am

join slack channel by commenting you email id in this three! Also Maintainers will surely look into it thank you and all the best

and yeah welcome to openELIS Global!

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Mvn clean install dataexport

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